mirror of
https://github.com/ivabus/pantry
synced 2024-11-22 08:25:07 +03:00
+htslib.org (#3163)
* +htslib.org * Needs bzip2 * bz2 and lzma as rundeps * zlib * libcurl --------- Co-authored-by: James Reynolds <magnsuviri@me.com> Co-authored-by: Jacob Heider <jacob@tea.xyz>
This commit is contained in:
parent
d894fc7486
commit
fc1f7968f6
2 changed files with 39 additions and 0 deletions
36
projects/htslib.org/package.yml
Normal file
36
projects/htslib.org/package.yml
Normal file
|
@ -0,0 +1,36 @@
|
||||||
|
distributable:
|
||||||
|
url: https://github.com/samtools/htslib/releases/download/{{version.raw}}/htslib-{{version.raw}}.tar.bz2
|
||||||
|
strip-components: 1
|
||||||
|
|
||||||
|
versions:
|
||||||
|
github: samtools/htslib
|
||||||
|
|
||||||
|
dependencies:
|
||||||
|
sourceware.org/bzip2: '*'
|
||||||
|
tukaani.org/xz: '*'
|
||||||
|
zlib.net: ^1
|
||||||
|
curl.se: '>=5'
|
||||||
|
|
||||||
|
build:
|
||||||
|
dependencies:
|
||||||
|
tea.xyz/gx/cc: '*'
|
||||||
|
gnu.org/make: '*'
|
||||||
|
gnu.org/autoconf: '*'
|
||||||
|
gnu.org/automake: ^1
|
||||||
|
script:
|
||||||
|
- autoreconf -i
|
||||||
|
- ./configure $ARGS
|
||||||
|
- make --jobs {{ hw.concurrency }} install
|
||||||
|
env:
|
||||||
|
ARGS:
|
||||||
|
- --prefix="{{prefix}}"
|
||||||
|
|
||||||
|
provides:
|
||||||
|
- bin/bgzip
|
||||||
|
- bin/htsfile
|
||||||
|
- bin/tabix
|
||||||
|
|
||||||
|
test: |
|
||||||
|
htsfile test.sam
|
||||||
|
bgzip -c test.sam > sam.gz
|
||||||
|
tabix -p sam sam.gz
|
3
projects/htslib.org/test.sam
Normal file
3
projects/htslib.org/test.sam
Normal file
|
@ -0,0 +1,3 @@
|
||||||
|
@SQ SN:chr1 LN:500
|
||||||
|
r1 0 chr1 100 0 4M * 0 0 ATGC ABCD
|
||||||
|
r2 0 chr1 200 0 4M * 0 0 AATT EFGH
|
Loading…
Reference in a new issue