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879580fa87
* +htslib.org * +htslib.org/samtools * runtime deps --------- Co-authored-by: James Reynolds <magnsuviri@me.com> Co-authored-by: Jacob Heider <jacob@tea.xyz>
51 lines
1.1 KiB
YAML
51 lines
1.1 KiB
YAML
distributable:
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url: https://github.com/samtools/samtools/releases/download/{{version.raw}}/samtools-{{version.raw}}.tar.bz2
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strip-components: 1
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versions:
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github: samtools/samtools
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dependencies:
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htslib.org: '*'
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invisible-island.net/ncurses: '*'
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zlib.net: 1
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build:
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dependencies:
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tea.xyz/gx/make: '*'
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tea.xyz/gx/cc: c99
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script:
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- ./configure $ARGS
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- make --jobs {{ hw.concurrency }} install
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env:
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ARGS:
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- --prefix="{{prefix}}"
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- --with-htslib={{deps.htslib.org.prefix}}
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provides:
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- bin/ace2sam
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- bin/blast2sam.pl
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- bin/bowtie2sam.pl
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- bin/export2sam.pl
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- bin/fasta-sanitize.pl
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- bin/interpolate_sam.pl
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- bin/maq2sam-long
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- bin/maq2sam-short
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- bin/md5fa
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- bin/md5sum-lite
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- bin/novo2sam.pl
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- bin/plot-ampliconstats
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- bin/plot-bamstats
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- bin/psl2sam.pl
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- bin/sam2vcf.pl
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- bin/samtools
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- bin/samtools.pl
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- bin/seq_cache_populate.pl
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- bin/soap2sam.pl
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- bin/wgsim
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- bin/wgsim_eval.pl
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- bin/zoom2sam.pl
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test: |
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samtools faidx test.fasta
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test "$(cat test.fasta.fai)" = "U00096.2:1-70 70 15 70 71"
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